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 A Gram stain of Bacteroides fragilis |
Bacteroides Sequence Data
I have finally updated the sequences! Also included is a page containing only the latest updates.
Updates
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* The Plasmid, Transposon and Antibiotic Resistance genes can also be found in the appropriate Species table.
(Even though they are not part of a transposon I included target sequences in the table containing transposon sequences)
* Click on the Accession number to view the sequence.
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| 16S-23S rDNA intergenic spacer region | AF176689 |
| 16S ribosomal RNA. | M86695 |
| Sequences of Bacteroides fragilis Genes |
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| 638R polysaccharide B (PS B2) biosynthesis locus, complete sequence; and unknown genes | AF125164 |
| DNA gyrase subunit A (gyrA) gene, partial cds | AF102986 |
| unknown gene | AF118244 |
| mobilization protein C (mobC) gene, complete cds | AF118243 |
| mobilization protein B (mobB) gene, complete cds | AF118242 |
| mobilization protein A (mobA) gene, complete cds | AF118241 |
| R plasmid pBF4 (from B.fragilis) ermF gene encoding macrolide-lincosamide-streptogramin B resistance, with an IS4351 insertion in the 5' flank | M14730 |
| transposon Tn4555 TnpA (tnpA), integrase (int), TnpC (tnpC), excisionase (xis), mobilization protein (mobA), and beta-lactamase (cfxA) genes, complete cds; and unknown genes | U75371 |
| gyrB gene for DNA gyrase B subunit, complete cds | AB017713 |
| gyrA gene for DNA gyrase A subunit, complete cds | AB017712 |
| genes for putative ribosomal proteins S1 | X97122 |
| alkyl hydroperoxide reductase subunit C (ahpC) and alkyl hydroperoxide reductase subunit F (ahpF) genes, complete cds | AF129406 |
| metalloprotease enterotoxin gene, complete cds | AF081785 |
| 7-alpha-hydroxysteroid dehydrogenase (hdhA) gene, complete cds | AF173833 |
| 16S-23S ribosomal RNA intergenic spacer region, partial sequence | AF172709 |
| A DNA probe for Bacteroides fragilis genomic DNA | E17329 |
| A DNA probe for Bacteroides fragilis genomic DNA | E17328 |
| A DNA probe for Bacteroides fragilis genomic DNA | E17327 |
| A DNA probe for Bacteroides fragilis genomic DNA | E17326 |
| A DNA probe for Bacteroides fragilis genomic DNA | E17325 |
| A DNA probe for Bacteroides fragilis genomic DNA | E17324 |
| capsular polysaccharide biosynthesis operon, complete sequence | AF048749 |
| nanH gene for neuraminidase, complete cds | D28493 |
| cDNA clone 5-12C, mRNA sequence | AF055870 |
| cDNA clone 5-78E, mRNA sequence | AF055869 |
| cDNA clone 4-58Z, mRNA sequence | AF055868 |
| cDNA, mRNA sequence | AF055867 |
| cDNA clone 3-104W, mRNA sequence | AF055866 |
| cDNA clone 6-26M, mRNA sequence | AF055871 |
| 419 putative metalloprotease II (t3) and BFT-3 (bft-3) genes, complete cds; and unknown gene | AF103902 |
| batI operon, complete sequence | AF116251 |
| insertion sequence IS1187 | Y18979 |
| bft-2 gene for metalloprotease, complete cds | AB026626 |
| bft-1 gene for metalloprotease, complete cds | AB026625 |
| bft-3 gene for metalloprotease, complete cds | AB026624 |
| transposon Tn5520 transposase (bipH) and mobilization protein BmpH (bmpH) genes, complete cds | AF038866 |
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| neuraminidase (nanH) gene, partial cds | AF031639 |
| unknown gene | AF104909 |
| transposon Tn5520 transposase (bigH) gene, complete cds | AF038866 |
| metalloprotease enterotoxin gene, partial cds | AF081785 |
| NAD(H) glutamate dehydrogenase (gdhB) gene, complete cds | U78108 |
| elongation factor P homologue gene, complete cds | U75509 |
| fragilysin pathogenicity islet integration site | AF038460 |
| strain VPI 13784 putative metalloprotease II and fragilysin genes, complete cds; and unknown gene | AF038459 |
| metalloprotease toxin-3 (t3) gene, complete cds | AF056297 |
| RecA (recA) gene, partial cds. | AF013605 |
| (bctA) gene, complete cds. | U63096 |
| beta-glucosidase gene, complete cds. | AF006658 |
| transposon Tn4555 target insertion sites. | U74490 |
| transposon Tn4555 TnpA (tnpA), integrase (int), TnpC (tnpC), excisionase (xis), mobilization protein (mobA), and beta-lactamase (cfxA) genes, complete cds; and unknown genes | U75371 |
| plasmid pIP421 DNA, mobilization region | Y10480 |
| enterotoxin gene (bftP), complete cds. | U67735 |
| metalloprotease toxin-2 (bft-2) gene, complete cds. | U90931 |
| plasmid pBI143 mobilization protein (mobA) gene and plasmid replication protein RepA (repA) gene, complete cds. | U30316 |
| Cloning vector pFD288 beta-galactosidase (lacZ') gene, partial cds, spectinomycin adenyltransferase (aad9), rRNA methyltransferase (ermF), replication protein (repA) and (mobA) genes, complete cds. | U30830 |
| DNA for superoxide dismutase, complete cds. | D13756 |
| cfiA gene | X85036 |
| DNA for beta-isopropylmalate dehydrogenase, complete cds. | D45169 |
| tetA(Q)3 gene | Y08615 |
| hupB & hupA genes | X97122 |
| (bctA) gene, complete cds. | U63096 |
| 16S rRNA (Bfr81) | X83943 |
| 16S rRNA (B119) | X83942 |
| 16S rRNA (TAL3636) | X83941 |
| 16S rRNA (12491) | X83940 |
| 16S rRNA (6791) | X83939 |
| 16S rRNA (2991) | X83938 |
| 16S rRNA (790) | X83937 |
| 16S rRNA (AIP 638) | X83936 |
| 16S rRNA (4225) | X83950 |
| 16S rRNA (4117) | X83949 |
| 16S rRNA (2393) | X83948 |
| 16S rRNA (KSB1486) | X83947 |
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| 16S rRNA (Bfr920) | X83946 |
| 16S rRNA (Bfr901) | X83945 |
| 16S rRNA (Bfr189) | X83944 |
| 16S rRNA (ATCC 25285T) | X83935 |
| pIP421 plasmid repA gene | X86702 |
| Transposon Tn4399 (from Bacteroides fragilis) mocA and mocB genes, complete cds. | L20975 |
| R plasmid pBF4 (from B.fragilis) ermF gene encoding macrolide-lincosamide-streptogramin B resistance, with an IS4351 insertion in the 5' flank. | M14730 |
| Transposon Tn4351 with insertion element IS4351 (from Bacteroides fragilis R plasmid) encoding macrolide-lincosamide-streptogramin B resistance (ermF), complete cds. | M17124 |
| mobilization protein MbpA (mbpA), MbpB (mbpB) and MbpC (mbpC) genes, complete cds. | U25716 |
| glyceraldehyde 3-phosphate dehydrogenase gene, partial cds. | U27541 |
| catalase (katB) gene, complete cds. | U18676 |
| nimD gene and IS-1169 | X76949 |
| nanH gene for neuraminidase, complete cds. | D28493 |
| insertion sequence IS1168 and nimB gene for 5-Nitroimidazole antibiotic resistance protein | X71443 |
| methyltransferase (ermFU) gene, complete cds. | M62487 |
| glutamine synthetase (glnA) gene, complete cds. | M28252 |
| RBF-103 beta-lactamase (cepA-103) and transposase (tnpA and tnpB) genes, complete cds. | U05888 |
| ATCC 25285 beta-lactamase (cepA-85) gene, complete cds. | U05887 |
| RBF-49 beta-lactamase (cepA-49) gene, complete cds, and transposase (tnpB) gene, partial cds. | U05886 |
| CS-44 beta-lactamase (cepA-44) gene, complete cds. | U05885 |
| CS-29 beta-lactamase (cepA-29) gene, complete cds. | U05884 |
| CS14 beta-lactamase (cepA-14) gene, complete cds. | U05883 |
| DNA sequence IS1186 | X72301 |
| target sequence for IS1186 | X72300 |
| cephalosporinase (cepA) gene, complete cds and complete ORF2. | L13472 |
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| tetA(Q)2 gene | Z21523 |
| levanase (scrL) gene, complete cds. | M83774 |
| insertion sequence element IS942 with open reading frame, complete cds. | M60018 |
| DNA fragment with an ORF. | M76551 |
| Transposon Tn4551 streptomycin adenyltransferase (aadS) gene, complete cds. | M72415 |
| iron (Fe) superoxide dismutase (sod) gene, complete cds. | M96560 |
| 16S rRNA gene. | M11656 |
| conjugal transfer (of antibiotic-resistance factors) protein (btgA and btgB) genes, complete cds. | M77806 |
| beta-lactamase gene, complete cds. | M63556 |
| recA gene, complete cds. | M63029 |
| Transposon Tn4351 tetracycline resistance protein (tetX) gene, complete cds. | M37699 |
| neuraminidase (nanH) gene, partial cds. | M31663 |
| imipenem-cefoxitin-hydrolyzing enzyme (cfiA) gene, complete cds. | M34831 |
| ATP synthase beta-subunit gene, complete cds. | M22247 |
| Transposon Tn4551 clindamycin resistance determinant (ermFS) and direct repeat sequence (DRS4551-R). | M17808 |
| ribosomal RNA small subunit. | M61006 |
| rprXY operon: rprX, rprX=inner membrane signal-transducing protein [Genomic, 2652 nt] | S59000 |
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| 16S-23S rDNA intergenic spacer region | AF176691 |
| small subunit ribosomal RNA gene, partial sequence. | U58265 |
| small subunit ribosomal RNA gene, partial sequence. | U58233 |
| small subunit ribosomal RNA gene, partial sequence. | U58231 |
| xylanase precursor gene and xylosidase/arabinosidase gene, complete cds. | U04957 |
| 16S rRNA (ATCC 8483T) | X83952 |
| arabinosidase (asdII) gene, complete cds and putative transketolase, partial cds. | U15179 |
| arabinosidase (asdI) gene, complete cds. | U15178 |
| (NCTC 11153) 16S ribosomal RNA. | L16484 |
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| Sequences of Bacteroides thetaiotaomicron Genes |
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| 30S ribosomal protein S16-like protein, fucose gene cluster, and RNA | AF137263 |
| 16S-23S ribosomal RNA intergenic spacer region, partial sequence | AF172710 |
| outer membrane protein (susG) gene, complete | L77732 |
| outer membrane protein (susF) gene, complete cds. | L77733 |
| outer membrane protein (susD) gene, complete cds. | L77614 |
| outer membrane protein (susE) gene, complete cds. | L77615 |
| NAD(P)H-dependent glutamate dehydrogenase gene, complete cds | U82241 |
| regulatory protein (susA) gene, complete cds, and transposase homolog gene, partial cds. | U67062 |
| pullulanase (pulI) gene, complete cds. | U67061 |
| neopullulanase (susA) and alpha-glucosidase (susB) genes, complete cds. | U66897 |
| NBU1 insertion site attBT1-2. | U51916 |
| Leu-tRNA gene, complete sequence. | U51915 |
| RecA (recA) gene, partial cds. | U63514 |
| lyase 2 gene, complete cds. | L42367 |
| outer membrane protein (susC) gene, complete cds. | L49338 |
| conjugal transposon Tcr Emr 7853, rRNA methyltransferase gene, complete cds. | L42817 |
| outer membrane protein (csuF) gene. | L42372 |
| tetQ gene for TetQ protein | X58717 |
| nimC gene and IS-1170 | L76948 |
| 16S ribosomal RNA. | L16489 |
| RNase P (rnpB) gene, RNA component. | L25702 |
| rteC gene, complete cds. | L02419 |
| regulatory protein linking two polysaccharide utilization pathways (chuR) gene, complete cds. | L00678 |
| rteA and rtaB genes involved in production of plasmid-like forms, complete cds, and tetQ gene, 3' end. | M81439 |
| 16S ribosomal RNA. | M58763 |
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| 16S-23S rDNA intergenic spacer region | AF176692 |
| RecA (recA) gene, partial cds. | AF013606 |
| small subunit ribosomal RNA gene, partial sequence. | U58254 |
| small subunit ribosomal RNA gene, partial sequence. | U58247 |
| small subunit ribosomal RNA gene, partial sequence. | U58232 |
| insertion element NBU1 fragment, integrase IntN1 gene, complete cds. | U51917 |
| ORF2, partial cds and beta-lactamase (cblA) gene, complete cds. | L08472 |
| (ATCC 8492) 16S ribosomal RNA. | L16486 |
| mobilization protein (mob) gene, complete cds. | L13840 |
| {XBU4422 insertion site} [Bacteroides uniformis, 1001, plasmid pEG920, Plasmid, 57 nt] | S75300 |
| {XBU4422 insertion site} [Bacteroides uniformis, 1001, plasmid pE5-2, Plasmid, 57 nt] | S75301 |
| {XBU4422 insertion site} [Bacteroides uniformis, 1001, plasmid pNIL 51, Plasmid, 57 nt] | S75302 |
| {XBU4422 insertion site} [Bacteroides uniformis, 1001, Genomic, 57 nt] gi|241886|gb|S75298|S75298 [241886] | S75298 |
| {left end} [Bacteroides uniformis, 1001, cryptic conjugal element XBU4422, Transposon, 184 nt] | S75303 |
| {right end} [Bacteroides uniformis, 1001, cryptic conjugal element XBU4422, Transposon, 207 nt] | S75304 |
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Accession # |
| 16S-23S rDNA intergenic spacer region | AF176693 |
| mobA and mobB genes | X92849 |
| beta-lactamase (cfxA) gene, complete cds and mobilization protein (mobA) gene, complete cds. | U38243 |
| small subunit ribosomal RNA gene, partial sequence. | U58261 |
| pIP417 plasmid repA gene | X86701 |
| pIP417 IS1168 insertion sequence and nimA gene for 5-Nitroimidazole antibiotic resistance protein | X71444 |
| 16S ribosomal RNA. | M58762 |
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| Tn4555 TnpA (tnpA), integrase (int), TnpC (tnpC), excisionase (xis), mobilization protein (mobA), and beta-lactamase (cfxA) genes, complete cds; and unknown genes | U75371 |
| transposon Tn5520 transposase (bigH) gene, complete cds | AF038866 |
| transposon Tn4555 target insertion sites. | U74490 |
| plasmid pIP421 DNA, mobilization region | Y10480 |
| plasmid pBI143 mobilization protein (mobA) gene and plasmid replication protein RepA (repA) gene, complete cds. | U30316 |
| Cloning vector pFD288 beta-galactosidase (lacZ') gene, partial cds, spectinomycin adenyltransferase (aad9), rRNA methyltransferase (ermF), replication protein (repA) and (mobA) genes, complete cds. | U30830 |
| pIP421 plasmid repA gene | X86702 |
| Transposon Tn4399 (from Bacteroides fragilis) mocA and mocB genes, complete cds. | L20975 |
| R plasmid pBF4 (from B.fragilis) ermF gene encoding macrolide-lincosamide-streptogramin B resistance, with an IS4351 insertion in the 5' flank. | M14730 |
| Transposon Tn4351 with insertion element IS4351 (from Bacteroides fragilis R plasmid) encoding macrolide-lincosamide-streptogramin B resistance (ermF), complete cds. | M17124 |
| mobilization protein MbpA (mbpA), MbpB (mbpB) and MbpC (mbpC) genes, complete cds. | U25716 |
| nimD gene and IS-1169 | X76949 |
| Insertion sequence IS1168 and nimB gene for 5-Nitroimidazole antibiotic resistance protein | X71443 |
| RBF-103 beta-lactamase (cepA-103) and transposase (tnpA and tnpB) genes, complete cds. | U05888 |
| RBF-49 beta-lactamase (cepA-49) gene, complete cds, and transposase (tnpB) gene, partial cds. | U05886 |
| DNA sequence IS1186 | X72301 |
| target sequence for IS1186 | X72300 |
| insertion sequence element IS942 with open reading frame, complete cds. | M60018 |
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| Transposon Tn4551 streptomycin adenyltransferase (aadS) gene, complete cds. | M72415 |
| conjugal transfer (of antibiotic-resistance factors) protein (btgA and btgB) genes, complete cds. | M77806 |
| Transposon Tn4351 tetracycline resistance protein (tetX) gene, complete cds. | M37699 |
| Conjugal transposon Tcr Emr 7853, rRNA methyltransferase gene, complete cds. | L42817 |
| nimC gene and IS-1170 | L76948 |
| rteC gene, complete cds. | L02419 |
| rteA and rtaB genes involved in production of plasmid-like forms, complete cds, and tetQ gene, 3' end. | M81439 |
| insertion element NBU1 fragment, integrase IntN1 gene, complete cds. | U51917 |
| mobilization protein (mob) gene, complete cds. | L13840 |
| {left end} [Bacteroides uniformis, 1001, cryptic conjugal element XBU4422, Transposon, 184 nt] | S75303 |
| right end} [Bacteroides uniformis, 1001, cryptic conjugal element XBU4422, Transposon, 207 nt] | S75304 |
| mobA and mobB genes | X92849 |
| eta-lactamase (cfxA) gene, complete cds and mobilization protein (mobA) gene, complete cds. | U38243 |
| pIP417 plasmid repA gene | X86701 |
| pIP417 IS1168 insertion sequence and nimA gene for 5-Nitroimidazole antibiotic resistance protein | X71444 |
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